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Creators/Authors contains: "Johnson, James"

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  1. Abstract Many nucleosynthetic channels create the elements, but two-parameter models characterized byαand Fe nonetheless predict stellar abundances in the Galactic disk to accuracies of 0.02–0.05 dex for most measured elements, near the level of current abundance uncertainties. It is difficult to make individual measurements more precise than this to investigate lower-amplitude nucleosynthetic effects, but population studies of mean abundance patterns can reveal more subtle abundance differences. Here, we look at the detailed abundances for 67,315 stars from the Apache Point Observatory Galactic Evolution Experiment (or APOGEE) Data Release 17, but in abundance residuals away from a best-fit two-parameter, data-driven nucleosynthetic model. We find that these residuals show complex structures with respect to age, guiding radius, and vertical action that are not random and are also not strongly correlated with sources of systematic error such as log ( g ) ,Teff, and radial velocity. The residual patterns, especially in Na, C+N, Mn, and Ce, trace kinematic structures in the Milky Way, such as the inner disk, thick disk, and flared outer disk. A principal component analysis suggests that most of the observed structure is low-dimensional and can be explained by a few eigenvectors. We find that some, but not all, of the effects in the low-αdisk can be explained by dilution with fresh gas, so that the abundance ratios resemble those of stars with higher metallicity. The patterns and maps we provide can be combined with accurate forward models of nucleosynthesis, star formation, and gas infall to provide a more detailed picture of star and element formation in different Milky Way components. 
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    Free, publicly-accessible full text available April 25, 2026
  2. Abstract BackgroundEcological barriers can shape the movement strategies of migratory animals that navigate around or across them, creating migratory divides. Wind plays a large role in facilitating aerial migrations and can temporally or spatially change the challenge posed by an ecological barrier, with beneficial winds potentially converting a barrier into a corridor. Here, we explore the role wind plays in shaping initial southbound migration strategy among individuals breeding at two sites along an ecological barrier. MethodsUsing GPS satellite transmitters, we tracked the southbound migrations of Short-billed Dowitchers(Limnodromus griseus caurinus)from two breeding sites in Alaska to nonbreeding sites in coastal Mexico. The breeding sites were positioned in distinct regions along an ecological barrier – the Gulf of Alaska. We investigated potential differences in migratory timing, wind availability, and tailwind supportenroute across the Gulf of Alaska between individuals breeding at the two sites. ResultsRoute choice and arrival timing to wintering sites differed markedly between the two breeding sites: individuals departing from the more westerly site left at the same time as those from further east but crossed the Gulf of Alaska farther west and arrived along the Pacific coast of Mexico an average of 19 days earlier than their counterparts. Dowitchers from both sites departed with slight tailwinds, but once aloft over the Gulf of Alaska, birds from the more westerly site had up to twelve times more tailwind assistance than birds from the more easterly one. ConclusionsThe distinct migration strategies and degree of wind assistance experienced by birds at these two breeding sites demonstrates how differences in wind availability along migratory routes can form the basis for intraspecific variation in migration strategies with potential carryover effects. Future changes in wind regimes may therefore interact with changes in habitat availability to influence migration patterns and migratory bird conservation. 
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    Free, publicly-accessible full text available December 1, 2025
  3. Abstract Metallicities of both gas and stars decline toward large radii in spiral galaxies, a trend known as the radial metallicity gradient. We quantify the evolution of the metallicity gradient in the Milky Way as traced by APOGEE red giants with age estimates from machine learning algorithms. Stars up to ages of ∼9 Gyr follow a similar relation between metallicity and Galactocentric radius. This constancy challenges current models of Galactic chemical evolution, which typically predict lower metallicities for older stellar populations. Our results favor anequilibrium scenario, in which the gas-phase gradient reaches a nearly constant normalization early in the disk lifetime. Using a fiducial choice of parameters, we demonstrate that one possible origin of this behavior is an outflow that more readily ejects gas from the interstellar medium (ISM) with increasing Galactocentric radius. A direct effect of the outflow is that baryons do not remain in the ISM for long, which causes the ratio of star formation to accretion, Σ ̇ / Σ ̇ in , to quickly become constant. This ratio is closely related to the local equilibrium metallicity, since its numerator and denominator set the rates of metal production by stars and hydrogen gained through accretion, respectively. Building in a merger event results in a perturbation that evolves back toward the equilibrium state on ∼Gyr timescales. Under the equilibrium scenario, the radial metallicity gradient is not a consequence of the inside-out growth of the disk but instead reflects a trend of declining Σ ̇ / Σ ̇ in with increasing Galactocentric radius. 
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    Free, publicly-accessible full text available July 10, 2026
  4. Chen, Tzong-Yueh (Ed.)
    Salinity gradients act as strong environmental barriers that limit the distribution of aquatic organisms. Changes in gene expression associated with transitions between freshwater and saltwater environments can provide insights into organismal responses to variation in salinity. We used RNA-sequencing (RNA-seq) to investigate genome-wide variation in gene expression between a hypersaline population and a freshwater population of the livebearing fish speciesLimia perugiae(Poeciliidae). Our analyses of gill gene expression revealed potential molecular mechanisms underlying salinity tolerance in this species, including the enrichment of genes involved in ion transport, maintenance of chemical homeostasis, and cell signaling in the hypersaline population. We also found differences in gene expression patterns associated with cell-cycle and protein-folding processes between the hypersaline and freshwaterL.perugiae. Bidirectional freshwater-saltwater transitions have occurred repeatedly during the diversification of fishes, allowing for broad-scale examination of repeatable patterns in evolution. Therefore, we compared transcriptomic variation inL.perugiaewith other teleosts that have made freshwater-saltwater transitions to test for convergence in gene expression. Among the four distantly related population pairs from high- and low-salinity environments that we included in our analysis, we found only ten shared differentially expressed genes, indicating little evidence for convergence. However, we found that differentially expressed genes shared among three or more lineages were functionally enriched for ion transport and immune functioning. Overall, our results—in conjunction with other recent studies—suggest that different genes are involved in salinity transitions across disparate lineages of teleost fishes. 
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    Free, publicly-accessible full text available December 5, 2025
  5. ABSTRACT The scaling of the specific Type Ia supernova (SN Ia) rate with host galaxy stellar mass $$\dot{\text{N}}_\text{Ia} / \text{M}_\star \sim \text{M}_\star ^{-0.3}$$ as measured in ASAS-SN and DES strongly suggests that the number of SNe Ia produced by a stellar population depends inversely on its metallicity. We estimate the strength of the required metallicity dependence by combining the average star formation histories (SFHs) of galaxies as a function of their stellar mass with the mass–metallicity relation (MZR) for galaxies and common parametrizations for the SN Ia delay-time distribution. The differences in SFHs can account for only ∼30 per cent of the increase in the specific SN Ia rate between stellar masses of M⋆ = 1010 and 107.2 M⊙. We find that an additional metallicity dependence of approximately ∼Z−0.5 is required to explain the observed scaling. This scaling matches the metallicity dependence of the close binary fraction observed in APOGEE, suggesting that the enhanced SN Ia rate in low-mass galaxies can be explained by a combination of their more extended SFHs and a higher binary fraction due to their lower metallicities. Due to the shape of the MZR, only galaxies below M⋆ ≈ 3 × 109 M⊙ are significantly affected by the metallicity-dependent SN Ia rates. The $$\dot{\text{N}}_\text{Ia} / \text{M}_\star \sim \text{M}_\star ^{-0.3}$$ scaling becomes shallower with increasing redshift, dropping by factor of ∼2 at 107.2 M⊙ between z = 0 and 1 with our ∼Z−0.5 scaling. With metallicity-independent rates, this decrease is a factor of ∼3. We discuss the implications of metallicity-dependent SN Ia rates for one-zone models of galactic chemical evolution. 
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  6. ABSTRACT We model the stellar abundances and ages of two disrupted dwarf galaxies in the Milky Way stellar halo: Gaia-Sausage Enceladus (GSE) and Wukong/LMS-1. Using a statistically robust likelihood function, we fit one-zone models of galactic chemical evolution with exponential infall histories to both systems, deriving e-folding time-scales of τin = 1.01 ± 0.13 Gyr for GSE and $$\tau _\text{in} = 3.08^{+3.19}_{-1.16}$$ Gyr for Wukong/LMS-1. GSE formed stars for $$\tau _\text{tot} = 5.40^{+0.32}_{-0.31}$$ Gyr, sustaining star formation for ∼1.5–2 Gyr after its first infall into the Milky Way ∼10 Gyr ago. Our fit suggests that star formation lasted for $$\tau _\text{tot} = 3.36^{+0.55}_{-0.47}$$ Gyr in Wukong/LMS-1, though our sample does not contain any age measurements. The differences in evolutionary parameters between the two are qualitatively consistent with trends with stellar mass M⋆ predicted by simulations and semi-analytic models of galaxy formation. Our inferred values of the outflow mass-loading factor reasonably match $$\eta \propto M_\star ^{-1/3}$$ as predicted by galactic wind models. Our fitting method is based only on Poisson sampling from an evolutionary track and requires no binning of the data. We demonstrate its accuracy by testing against mock data, showing that it accurately recovers the input model across a broad range of sample sizes (20 ≤ N ≤ 2000) and measurement uncertainties (0.01 ≤ σ[α/Fe], σ[Fe/H] ≤ 0.5; $$0.02 \le \sigma _{\log _{10}(\text{age})} \le 1$$). Due to the generic nature of our derivation, this likelihood function should be applicable to one-zone models of any parametrization and easily extensible to other astrophysical models which predict tracks in some observed space. 
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  7. ABSTRACT We derive empirical constraints on the nucleosynthetic yields of nitrogen by incorporating N enrichment into our previously developed and empirically tuned multizone galactic chemical evolution model. We adopt a metallicity-independent (‘primary’) N yield from massive stars and a metallicity-dependent (‘secondary’) N yield from AGB stars. In our model, galactic radial zones do not evolve along the observed [N/O]–[O/H] relation, but first increase in [O/H] at roughly constant [N/O], then move upward in [N/O] via secondary N production. By t ≈ 5 Gyr, the model approaches an equilibrium [N/O]–[O/H] relation, which traces the radial oxygen gradient. Reproducing the [N/O]–[O/H] trend observed in extragalactic systems constrains the ratio of IMF-averaged N yields to the IMF-averaged O yield of core-collapse supernovae. We find good agreement if we adopt $$y_\text{N}^\text{CC}/y_\text{O}^\text{CC}=0.024$$ and $$y_\text{N}^\text{AGB}/y_\text{O}^\text{CC} = 0.062(Z/Z_\odot)$$. For the theoretical AGB yields we consider, simple stellar populations release half their N after only ∼250 Myr. Our model reproduces the [N/O]–[O/H] relation found for Milky Way stars in the APOGEE survey, and it reproduces (though imperfectly) the trends of stellar [N/O] with age and [O/Fe]. The metallicity-dependent yield plays the dominant role in shaping the gas-phase [N/O]–[O/H] relation, but the AGB time-delay is required to match the stellar age and [O/Fe] trends. If we add ∼40 per cent oscillations to the star formation rate, the model reproduces the scatter in the gas phase [N/O]–[O/H] relation observed in external galaxies by MaNGA. We discuss implications of our results for theoretical models of N production by massive stars and AGB stars. 
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  8. Abstract Identifying the migration routes and stopover sites used by declining species is critical for developing targeted conservation actions. Long-distance migratory shorebirds are among the groups of birds declining most rapidly, yet we frequently lack detailed knowledge about the routes and stopover sites they use during their hemisphere-spanning migrations. This is especially true for species that migrate through mid-continental regions in the Western Hemisphere. We therefore used satellite transmitters to track 212 individuals of 6 shorebird species during their southward migrations—Pluvialis dominica (American Golden-Plover), Limosa haemastica (Hudsonian Godwit), Tringa flavipes (Lesser Yellowlegs), and Calidris subruficollis (Buff-breasted Sandpiper), C. melanotos (Pectoral Sandpiper), and Bartramia longicauda (Upland Sandpiper)—as they crossed the Amazon Basin of South America, a region from which reports of shorebird numbers are increasing but remain relatively rare. Our results make clear that the Amazon Basin provides stopover habitat for a large number of shorebirds: more than 74% of individuals tracked crossing the Amazon Basin stopped over in the region for an average of 2–14 days, with some spending the entire nonbreeding season there. All species selected stopover sites along the region’s many rivers and lakes, while within stopover sites each species exhibited distinct habitat preferences. The timing of stopovers within sub-basins of the Amazon Basin also coincided with periods of low water, when the muddy, shallow water habitats preferred by most shorebirds are likely plentiful. Together, our results highlight the need for detailed investigations into shorebird abundance and distribution within the Amazon Basin, threats to shorebirds within particular subbasins, and links between shorebird conservation efforts and those targeting the myriad other species that inhabit this dynamic, hyper-diverse region. 
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  9. Abstract We measure abundances of 12 elements (Na, Mg, Si, Ca, Sc, Ti, V, Cr, Mn, Fe, Co, Ni) in a sample of 86 metal-poor (−2 ≲ [Fe/H] ≲ −1) subgiant stars in the solar neighborhood. Abundances are derived from high-resolution spectra taken with the Potsdam Echelle Polarimetric and Spectroscopic Instrument on the Large Binocular Telescope, modeled using iSpec and MOOG. By carefully quantifying the impact of photon-noise (<0.05 dex for all elements), we robustly measure theintrinsicscatter of abundance ratios. At fixed [Fe/H], the rms intrinsic scatter in [X/Fe] ranges from 0.04 (Cr) to 0.16 dex (Na), with a median of 0.08 dex. Scatter in [X/Mg] is similar, and accounting for [α/Fe] only reduces the overall scatter moderately. We consider several possible origins of the intrinsic scatter with particular attention to fluctuations in the relative enrichment by core-collapse supernovae (CCSN) and Type Ia supernovae and stochastic sampling of the CCSN progenitor mass distribution. The stochastic sampling scenario provides a good quantitative explanation of our data if the effective number of CCSN contributing to the enrichment of a typical sample star isN∼ 50. At the median metallicity of our sample, this interpretation implies that the CCSN ejecta are mixed over a gas mass ∼6 × 104Mbefore forming stars. The scatter of elemental abundance ratios is a powerful diagnostic test for simulations of star formation, feedback, and gas mixing in the early phases of the Galaxy. 
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  10. Abstract We investigate the [X/Mg] abundances of 16 elements for 82,910 Galactic disk stars from GALAH+ DR3. We fit the median trends of low-Ia and high-Ia populations with a two-process model, which describes stellar abundances in terms of a prompt core-collapse and delayed Type-Ia supernova component. For each sample star, we fit the amplitudes of these two components and compute the residual Δ[X/H] abundances from this two-parameter fit. We find rms residuals ≲0.07 dex for well-measured elements and correlated residuals among some elements (such as Ba, Y, and Zn) that indicate common enrichment sources. From a detailed investigation of stars with large residuals, we infer that roughly 40% of the large deviations are physical and 60% are caused by problematic data such as unflagged binarity, poor wavelength solutions, and poor telluric subtraction. As one example of a population with distinctive abundance patterns, we identify 15 stars that have 0.3–0.6 dex enhancements of Na but normal abundances of other elements from O to Ni and positive average residuals of Cu, Zn, Y, and Ba. We measure the median elemental residuals of 14 open clusters, finding systematic ∼0.1–0.4 dex enhancements of O, Ca, K, Y, and Ba and ∼0.2 dex depletion of Cu in young clusters. Finally, we present a restricted three-process model where we add an asymptotic giant branch star (AGB) component to better fit Ba and Y. With the addition of the third process, we identify a population of stars, preferentially young, that have much higher AGB enrichment than expected from their SNIa enrichment. 
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